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SRX17592038: Illumina denovo sequencing of Ligustrum vicaryi
1 ILLUMINA (Illumina NovaSeq 6000) run: 18.3M spots, 5.5G bases, 1.9Gb downloads

Design: Illumina denovo sequencing of Ligustrum vicaryi
Submitted by: Agricultural University of Hebei
Study: Complete chloroplast genomes and comparative analysis of Ligustrum species
show Abstracthide Abstract
To obtain further genetic information about genus Ligustrum, we spliced, assembled, and annotated the chloroplasts of Ligustrum sinense, Ligustrum obtusifolium, Ligustrum vicaryi, and Ligustrum ovalifolium 'Aureum', and investigated their characteristics in comparison with those of other published Ligustrum species. The objectives of this study were to provide whole-chloroplast genome data for four Ligustrum species, compare the genome structure and sequence variation of their chloroplast genomes, investigate simple and large repetitive sequences and hotspot regions as candidate sequences for Ligustrum species identification and phylogenetic studies, identify positively selected genes as potential genes for adaptive evolution in the genus.
Sample:
SAMN30871158 • SRS15129850 • All experiments • All runs
Library:
Name: CJY_llumina
Instrument: Illumina NovaSeq 6000
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 18.3M spots, 5.5G bases, 1.9Gb
Run# of Spots# of BasesSizePublished
SRR2159028418,270,2015.5G1.9Gb2022-09-16

ID:
24476352

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